rs27315737 SNP Detail

Summary

• ID
  rs27315737
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCA
  CACACACACA CACACACACA CACACACACA CACACACACA CACCTCACAC ACACCTGGAT
  W
  TCTAAAGAAA CAGAAATTCC AGAGAGATGC TGGGGGTGAC CTCCTAGGAC CACAGTGAAG
  TCTCAGGCTG CAGCTCAGCC ACCTCCCTGG GCCTTCCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37556661	NES08905962	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315737					SNP	T	A	A	T	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556661	NES08905962	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034462 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1714 bp distal
Rr567775	regulatory region 567775	1508 bp distal
Rr567776	regulatory region 567776	1466 bp distal
Rr567777	regulatory region 567777	within coordinates
Rr567778	regulatory region 567778	1205 bp proximal
Tssr20971	transcription start site region 20971	1783 bp downstream
Tssr20972	transcription start site region 20972	1774 bp downstream
Tssr20973	transcription start site region 20973	1760 bp downstream
Tssr20974	transcription start site region 20974	1710 bp downstream
Tssr20975	transcription start site region 20975	1685 bp downstream
Tssr20976	transcription start site region 20976	1269 bp downstream
Tssr20977	transcription start site region 20977	813 bp upstream