rs27315739 SNP Detail

Summary

• ID
  rs27315739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGTGTG TGTGTGTGTG TTGGGTGGAC GGACCATCCA
  ATTTTCAGTG GGACTAAAAC CTCATAGATA ATGCCATGAT GGTCTCCCCA GTTGCCTCTT
  Y
  ATTCCAGTCA CACACTGAGA ATATGGAGTT CTGTGGTTTT ACATCAGTTT GTCTATTTTT
  AGTTCACTTA ATCTCACACA GAGAACCTTG GTCTAGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37556663	NES08905977	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	C	T	T	C	T		T	T	T		C
ss320569705	CHEV_2_154017964	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27315739					SNP	C	T	T	C	T	C	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556663	NES08905977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034148 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1400 bp distal
Rr567775	regulatory region 567775	1194 bp distal
Rr567776	regulatory region 567776	1152 bp distal
Rr567777	regulatory region 567777	within coordinates
Rr567778	regulatory region 567778	1519 bp proximal
Tssr20971	transcription start site region 20971	1469 bp downstream
Tssr20972	transcription start site region 20972	1460 bp downstream
Tssr20973	transcription start site region 20973	1446 bp downstream
Tssr20974	transcription start site region 20974	1396 bp downstream
Tssr20975	transcription start site region 20975	1371 bp downstream
Tssr20976	transcription start site region 20976	955 bp downstream
Tssr20977	transcription start site region 20977	1127 bp upstream