rs27315741 SNP Detail

Summary

• ID
  rs27315741
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGAAAGTG GAGCAGGGAG AGAGATAGGG GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTTGGGTGGA CGGACCATCC AATTTTCAGT
  K
  GGACTAAAAC CTCATAGATA ATGCCATGAT GGTCTCCCCA GTTGCCTCTT CATTCCAGTC
  ACACACTGAG AATATGGAGT TCTGTGGTTT TACATCAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37556665	NES08905975	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	G	T	T	G	T	T	T	T	T	G
ss148023939	ENSMUSSNP762692	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27315741					SNP	G	G	T	T	G	T	G	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556665	NES08905975	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034097 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1349 bp distal
Rr567775	regulatory region 567775	1143 bp distal
Rr567776	regulatory region 567776	1101 bp distal
Rr567777	regulatory region 567777	13 bp proximal
Rr567778	regulatory region 567778	1570 bp proximal
Tssr20971	transcription start site region 20971	1418 bp downstream
Tssr20972	transcription start site region 20972	1409 bp downstream
Tssr20973	transcription start site region 20973	1395 bp downstream
Tssr20974	transcription start site region 20974	1345 bp downstream
Tssr20975	transcription start site region 20975	1320 bp downstream
Tssr20976	transcription start site region 20976	904 bp downstream
Tssr20977	transcription start site region 20977	1178 bp upstream