rs27315742 SNP Detail

Summary

• ID
  rs27315742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCAGATA CCTGTGTGGG GCTGCACACA CAAAAACAGC
  AGCCATCACA CCTAAACACC CAAACTTGGT TCTCACTGTC ATCGGCACAC TGTGGTCCTA
  R
  TGTTGATGGA AAGTGACATT CTCTGCTTTA GGAAGTGAGA CACAATTTCC AGTTAGGAGT
  AGAACATTGA ACTTATTCAA GTTCTCCAAT GTGGCTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37556668	NES08906000	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G		G	G		G	G	G
ss45368410	mCV23868188	ABI	CRAMUS_MOUSE	f	SNP		A				A	G
ss320569697	CHEV_2_154017333	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27315742					SNP	A	A	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556668	NES08906000	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033517 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	769 bp distal
Rr567775	regulatory region 567775	563 bp distal
Rr567776	regulatory region 567776	521 bp distal
Rr567777	regulatory region 567777	593 bp proximal
Tssr20971	transcription start site region 20971	838 bp downstream
Tssr20972	transcription start site region 20972	829 bp downstream
Tssr20973	transcription start site region 20973	815 bp downstream
Tssr20974	transcription start site region 20974	765 bp downstream
Tssr20975	transcription start site region 20975	740 bp downstream
Tssr20976	transcription start site region 20976	324 bp downstream
Tssr20977	transcription start site region 20977	1758 bp upstream