rs27315743 SNP Detail

Summary

• ID
  rs27315743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATACCCCAA CCAGTACCAC AGGCAGGCGG CGGGGATAAA
  GCAAGCTCAG CCAGGTATCC GTGTGGCACT GGTGCACCTG ATATGTGACT GGGAAGCACT
  Y
  ACAGTAAATC ACTAGGGTTA GGCAAGGTGG CTGAGGTTAC AATGACGGGA AATCAGTTGG
  ACAGGTGGGG TGGAAGTCAG GGAGACTTGA GAAGAATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37556669	NES08906014	PERLEGEN	MM_PANEL2	f	SNP		T	T	T			T		C	T	T	C
ss45297975	mCV23868175	ABI	CRAMUS_MOUSE	f	SNP	C	T			C	T
ss148023883	ENSMUSSNP1133593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				T
ss320569686	CHEV_2_154016014	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27315743					SNP	C	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556669	NES08906014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032198 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	540 bp upstream
Rr567774	regulatory region 567774	50 bp proximal
Rr567775	regulatory region 567775	551 bp proximal
Rr567776	regulatory region 567776	777 bp proximal
Rr567777	regulatory region 567777	1912 bp proximal
Tssr20971	transcription start site region 20971	471 bp upstream
Tssr20972	transcription start site region 20972	485 bp upstream
Tssr20973	transcription start site region 20973	498 bp upstream
Tssr20974	transcription start site region 20974	528 bp upstream
Tssr20975	transcription start site region 20975	555 bp upstream
Tssr20976	transcription start site region 20976	990 bp upstream