rs27315744 SNP Detail

Summary

• ID
  rs27315744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGGTTC CAGAAAGTTC
  TCTTGTATGA GACTTTGGTA CCAGCTATGT CAGGCATTGT GGCAACCTCA TCCAGGGTCT
  ATTGGCACCA CACTTCATGC CTGCCGGCTT CCTTTTGTAT CTAGGTAGCT TTGAAAAGGC
  AACTCATCTT TCAGGCTAAT ACCTACCCCC ATCTGGACTT TGAGTTTAAA CCCTCCAGGT
  Y
  ACCAGTTGCT TTGAAGTCCA AAGGGTGGTG TCAAGTTCCT GAGAAAGTGC CTGACTTTGA
  TTTTCCCAGA CCCAGCTCAG CAGGGTGGCA GAGGTGACTA ATATCAGCTG AACCCCGATA
  CTGAACAAGG AGACCTATAT GGTGGCCCCT CTGTGAGCTG AAACCAGACT GTTAGCAAAT
  ATTGAACTCC GGGCTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37556670	NES08906013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27315744					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556670	NES08906013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031843 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	895 bp upstream
Rr567774	regulatory region 567774	405 bp proximal
Rr567775	regulatory region 567775	906 bp proximal
Rr567776	regulatory region 567776	1132 bp proximal
Tssr20971	transcription start site region 20971	826 bp upstream
Tssr20972	transcription start site region 20972	840 bp upstream
Tssr20973	transcription start site region 20973	853 bp upstream
Tssr20974	transcription start site region 20974	883 bp upstream
Tssr20975	transcription start site region 20975	910 bp upstream
Tssr20976	transcription start site region 20976	1345 bp upstream