rs27315746 SNP Detail

Summary

• ID
  rs27315746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCCCTT TGTCAATGCC
  TTGCAAGCCA CACTTTACCT TCGGTTCTTC TCTGTGGCAC TTCACTAGCC TGCAGGATGA
  CGATAAATGT CAGCCATGAT GTCATGTAGC AGCCATGAGC ATCACACAGA CGACTCAGTC
  CCCAGGACTG TTTTATTGGT TCCAGAAAGT TCTCTTGTAT GAGACTTTGG TACCAGCTAT
  R
  TCAGGCATTG TGGCAACCTC ATCCAGGGTC TATTGGCACC ACACTTCATG CCTGCCGGCT
  TCCTTTTGTA TCTAGGTAGC TTTGAAAAGG CAACTCATCT TTCAGGCTAA TACCTACCCC
  CATCTGGACT TTGAGTTTAA ACCCTCCAGG TCACCAGTTG CTTTGAAGTC CAAAGGGTGG
  TGTCAAGTTC CTGAGAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37556672	NES08906011	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G	A	A	G
ss148023867	ENSMUSSNP3127901	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320569683	CHEV_2_154015507	CHEVERUD	SCREENING_POP	f	SNP					A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27315746					SNP	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556672	NES08906011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031691 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1047 bp upstream
Rr567773	regulatory region 567773	1974 bp distal
Rr567774	regulatory region 567774	557 bp proximal
Rr567775	regulatory region 567775	1058 bp proximal
Rr567776	regulatory region 567776	1284 bp proximal
Tssr20971	transcription start site region 20971	978 bp upstream
Tssr20972	transcription start site region 20972	992 bp upstream
Tssr20973	transcription start site region 20973	1005 bp upstream
Tssr20974	transcription start site region 20974	1035 bp upstream
Tssr20975	transcription start site region 20975	1062 bp upstream
Tssr20976	transcription start site region 20976	1497 bp upstream