rs27316066 SNP Detail

Summary

• ID
  rs27316066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163629958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCCAG AAAGGAAGCT
  ATGCTGATTG TGCCCATGAG GACATTCTAG CTAGAGCAGG GCAGGTTAGT GATGTCTAGG
  GGGCCCTCTA GTGGTCAAGA GAGCAAAGCT CTCACTACTT CCAAGCTGGG AGTCCAGGTT
  CAGATCAAAA TTATAACAAC CCCATTAGGC AAGAGCTGAA CGTCAAAGAG AATCAGGCCC
  M
  ATGGTAGGGG TCAGACAATG TCAGATACAC TCCTCTCACC CAGCGCCTCC AAAAAACCAT
  GGCAGTGGGC TTCACTGGGT ACCCTTGGGA AGCAAGAGTG TTTGCACTAC CAAGTGTCCT
  CTGCTCCTGG AGAGGGTGAG ACTAGTGCCG CAGATGTCAC TGAATGGATA TGGTGTGCCT
  TACCTGAAGT TGGGGGAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37519993	NES08873764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316066					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37519993	NES08873764	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163629958 () rs orientation: forward

Symbol	Name	Function Class
Gm75515	predicted gene, 75515	804 bp downstream
Rr569489	regulatory region 569489	within coordinates
Rr569490	regulatory region 569490	532 bp proximal
Rr569491	regulatory region 569491	638 bp proximal