rs27316391 SNP Detail

Summary

• ID
  rs27316391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162951201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGG CTGGCGGATT
  TCTGAGTTCG AGACCAGCCT GGTCTACAAA GTGAGTTAGT TCCAGGACAG CCAGGACTAG
  ACAGAGAAAC CCTGTCTCGA AAAACAAACA AACAAAAAAA ACCCCGCAAA AAACCAAAAA
  ACAAAAAACA AAAACAAAAA CAAAAAAAAA TCACAGAAGT TGGTTCATAG ATTGAACAAG
  Y
  TGATTCTCAC AAGAGAACAG GTAGAGGGCT GATAAAGTTT AGCCTTTGAT TTTTTTTTTT
  TTCTTCAATG TTGGGGACTG AACTTAGAAC ACTGTGCTTA GAAAGGAGTT CTACCGCCGA
  ATTCCTGTAC CCATGAACAT TGTAACCCGT GCCCAAGATT TTTGTTTTTC ATTAAAGAGC
  AAGGGGTGTC CAGTTTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522713	NES08871815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316391					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522713	NES08871815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162951201 () rs orientation: forward

Symbol	Name	Function Class
Rr569286	regulatory region 569286	574 bp distal
Rr569287	regulatory region 569287	1984 bp proximal