rs27316573 SNP Detail

Summary

• ID
  rs27316573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162895705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGAATT AAGCCAGGTG
  AAAACTTGTA GCTTTCAAGT CTTCATCCTT CTGTAGTAAA TGAAGTTTTC GGAGTTGTAC
  TGTCTAAAAG GGGCCAGCAG TTTTTGGAAA GAGATCTGAG GCCTGAGCCT AAAGGGCATT
  TGGCTGGGGT TCTTCCAGGC TCCTATCCTT TCAGGGAGTC CCAGTAAGAT GACACTCAGT
  W
  TTTAGGTAGT AAATGACAAC CTGAAAGAGA CAACCCTTGC CATCAGAAAT TGAACGTAAG
  CCAACAAGCC TTCCCCCTGG GCTTAATACA TTTCCTAGGA AAGGCTGCTG GGATCCCAGA
  ATGCTCACAG TTCAGCAGAG GAAATGCGCA CAAATGCAAG CAGATGGGCA GGAGACCCCA
  GTCGGGGAAG ATGTGGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37522898	NES08873767	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27316573					SNP	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522898	NES08873767	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162895705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	467 bp proximal
Gm75254	predicted gene, 75254	357 bp downstream
Mybl2	myeloblastosis oncogene-like 2	902 bp upstream
Rr374192	regulatory region 374192	527 bp downstream
Rr397459	regulatory region 397459	574 bp upstream
Rr569270	regulatory region 569270	1747 bp distal
Rr569271	regulatory region 569271	123 bp proximal
Rr569272	regulatory region 569272	619 bp proximal
Rr569273	regulatory region 569273	913 bp proximal
Tssr21431	transcription start site region 21431	785 bp upstream
Tssr21432	transcription start site region 21432	806 bp upstream
Tssr21433	transcription start site region 21433	866 bp upstream
Tssr21434	transcription start site region 21434	897 bp upstream
Tssr27277	transcription start site region 27277	622 bp downstream
Tssr27278	transcription start site region 27278	658 bp downstream