rs27316574 SNP Detail

Summary

• ID
  rs27316574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162895465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGCTA TCGGGTAATA
  CAAGCATATA ACTCATTGGG TTGTTATGAA GATCAAAGGT TTCTATGAAC TGTTTTTGTA
  GGTGAGGAAG CAGGCATGGA GAAGTTTGAT AATTTGAGAT AATGGAACTA GGGAAAGGTA
  GGCTGGGAAT CACCCCCGAG GAGATCTCAC TGTAAAGCAC ACTAGCCGTG AAGAGCAGCG
  R
  TCCACATGAA CTCCTTTGAA GGGAGAGGGG TGGGGGGAAG CCTTGAATTA AGCCAGGTGA
  AAACTTGTAG CTTTCAAGTC TTCATCCTTC TGTAGTAAAT GAAGTTTTCG GAGTTGTACT
  GTCTAAAAGG GGCCAGCAGT TTTTGGAAAG AGATCTGAGG CCTGAGCCTA AAGGGCATTT
  GGCTGGGGTT CTTCCAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522899	NES08873761	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316574					SNP	A	A	A	A	A	A	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522899	NES08873761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162895465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	707 bp proximal
Gm75254	predicted gene, 75254	597 bp downstream
Mybl2	myeloblastosis oncogene-like 2	1142 bp upstream
Rr374192	regulatory region 374192	287 bp downstream
Rr397459	regulatory region 397459	814 bp upstream
Rr569270	regulatory region 569270	1507 bp distal
Rr569271	regulatory region 569271	363 bp proximal
Rr569272	regulatory region 569272	859 bp proximal
Rr569273	regulatory region 569273	1153 bp proximal
Tssr21431	transcription start site region 21431	1025 bp upstream
Tssr21432	transcription start site region 21432	1046 bp upstream
Tssr21433	transcription start site region 21433	1106 bp upstream
Tssr21434	transcription start site region 21434	1137 bp upstream
Tssr27277	transcription start site region 27277	862 bp downstream
Tssr27278	transcription start site region 27278	898 bp downstream