rs27316579 SNP Detail

Summary

• ID
  rs27316579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162894590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTGCA TTTTGCCTCA
  GGCACTTACC TTGTGCAAAT TTCTAGGCCC TGCTTTTGCT CACAAGGAGA TTGGTAATCT
  GAGGGAGTGT GTGTGCAGCC TGCGGAGCAG CTTCTTGGAC TTCAGAGGGC AAGTGTGAAG
  ACAGGTAAAG GCAGAATATA ATCATAGGAC CAGCAGAAAG GCTACAGGGG TTGAGTAAGG
  Y
  ATGTAGGGTG GCCTAGGTCT ACCCTCAGCA ACAAAAGCCA CCTAACAGTG ATATAATACT
  TATATGTGCC TTATACATAT TCATGTACTT GTATTGCTTA GAGTTAAAGG TTTGTACACA
  GTACCCCAAA ATAAAGTGTA GGAGAAAATA ATCTCCCACT TCTCCAACAT GCTTTGACCT
  GGTTATTCTG CAGGGACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522904	NES08873803	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316579					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522904	NES08873803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162894590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	1582 bp proximal
Gm75254	predicted gene, 75254	1472 bp downstream
Rr374192	regulatory region 374192	within coordinates
Rr397459	regulatory region 397459	1689 bp upstream
Rr569270	regulatory region 569270	632 bp distal
Rr569271	regulatory region 569271	1238 bp proximal
Rr569272	regulatory region 569272	1734 bp proximal
Tssr21431	transcription start site region 21431	1900 bp upstream
Tssr21432	transcription start site region 21432	1921 bp upstream
Tssr21433	transcription start site region 21433	1981 bp upstream
Tssr27277	transcription start site region 27277	1737 bp downstream
Tssr27278	transcription start site region 27278	1773 bp downstream