rs27316581 SNP Detail

Summary

• ID
  rs27316581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162894504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAACCC TGATCTCCAG
  GCTCCTCTAG CTCTGGTGTC CTGTTTAACT GGCTCCAGTT TCTGGTCCCA TGTGGACTCC
  GCATCTGCTC TCTGCATTTT GCCTCAGGCA CTTACCTTGT GCAAATTTCT AGGCCCTGCT
  TTTGCTCACA AGGAGATTGG TAATCTGAGG GAGTGTGTGT GCAGCCTGCG GAGCAGCTTC
  Y
  TGGACTTCAG AGGGCAAGTG TGAAGACAGG TAAAGGCAGA ATATAATCAT AGGACCAGCA
  GAAAGGCTAC AGGGGTTGAG TAAGGCATGT AGGGTGGCCT AGGTCTACCC TCAGCAACAA
  AAGCCACCTA ACAGTGATAT AATACTTATA TGTGCCTTAT ACATATTCAT GTACTTGTAT
  TGCTTAGAGT TAAAGGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522906	NES08873801	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316581					SNP	T	T	T	T	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522906	NES08873801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162894504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	1668 bp proximal
Gm75254	predicted gene, 75254	1558 bp downstream
Rr374192	regulatory region 374192	within coordinates
Rr397459	regulatory region 397459	1775 bp upstream
Rr569270	regulatory region 569270	546 bp distal
Rr569271	regulatory region 569271	1324 bp proximal
Rr569272	regulatory region 569272	1820 bp proximal
Tssr21431	transcription start site region 21431	1986 bp upstream
Tssr27277	transcription start site region 27277	1823 bp downstream
Tssr27278	transcription start site region 27278	1859 bp downstream