rs27316582 SNP Detail

Summary

• ID
  rs27316582
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162894453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTGGT GGAGGTCACC
  AGATTCCTTG TGACACTGGA GTGACCTTGC TGCCCCAACC CTGATCTCCA GGCTCCTCTA
  GCTCTGGTGT CCTGTTTAAC TGGCTCCAGT TTCTGGTCCC ATGTGGACTC CGCATCTGCT
  CTCTGCATTT TGCCTCAGGC ACTTACCTTG TGCAAATTTC TAGGCCCTGC TTTTGCTCAC
  W
  AGGAGATTGG TAATCTGAGG GAGTGTGTGT GCAGCCTGCG GAGCAGCTTC TTGGACTTCA
  GAGGGCAAGT GTGAAGACAG GTAAAGGCAG AATATAATCA TAGGACCAGC AGAAAGGCTA
  CAGGGGTTGA GTAAGGCATG TAGGGTGGCC TAGGTCTACC CTCAGCAACA AAAGCCACCT
  AACAGTGATA TAATACTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37522907	NES08873800	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27316582					SNP	A	A	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37522907	NES08873800	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162894453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	1719 bp proximal
Gm75254	predicted gene, 75254	1609 bp downstream
Rr374192	regulatory region 374192	within coordinates
Rr397459	regulatory region 397459	1826 bp upstream
Rr569270	regulatory region 569270	495 bp distal
Rr569271	regulatory region 569271	1375 bp proximal
Rr569272	regulatory region 569272	1871 bp proximal
Tssr27277	transcription start site region 27277	1874 bp downstream
Tssr27278	transcription start site region 27278	1910 bp downstream