rs27317412 SNP Detail

Summary

• ID
  rs27317412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163885258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCCCCC AAGCAGCCAC
  AGTGCCTTTG GCGTTTTCCC CAACTCAGAT GGTCACACAG CTGCCCTGGC TGTTTGTGTT
  CTGAGGTCCA TGGCTAGGGA AATGACTTCA TAGAACTCAG AGCAATAGAA AGATATGTGT
  GTTTGAAGAC CAATTGCTGA CATTCTTTAG CAATTGCTTG AGCTGGAACA CATTGGAGTG
  R
  CATACTCTAT CACTGGGCCA GAGTGAGAAA CACTGGTTGA CATAAATCTG AGATCTTGTT
  CTGAGGGGCT TAGGGATAAG GGGAGATGGG AAGGGAGGGC GAATCCTTCA TGGAGGCCAG
  AGATGTTTCC TGCAGGGGAT AGTGTGGTTC CTCACATTGG TGTCCTTGAG AAGATGCGAA
  GCCCCTCACT TCAGATCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37518846	NES08877514	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27317412					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518846	NES08877514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163885258 () rs orientation: forward

Symbol	Name	Function Class
Pabpc1l	poly(A) binding protein, cytoplasmic 1-like	within coordinates
Tssr21509	transcription start site region 21509	963 bp downstream