rs27317417 SNP Detail

Summary

• ID
  rs27317417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163884401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCCAG CAACCCTTGT
  CTCCTCTTGC TTTCAGGTGA TGACAGAAAG TAGCCACAGC AAGGGCTTTG GCTTTGTGTG
  CTTTTCCTCT CCAGAAGAGG CAACGAAGGC CGTGACGGAG ATGAACGGGC GCATCGTGGG
  CACGAAACCG CTCTATGTGG CCCTGGCACA GCGCAAGGAG GAGCGGAAGG CCATCTTGAC
  Y
  AACCAGTATA GGCGACGCCC CTCTCACCCT GTCTTGAGCT CCTTCCAGCA GCCTACCAGC
  TACCTGCTCC CTGCTGTACC CCAGGTGACA GTGTGTCTAC AGCTCCAGCT GGGGGACAGA
  ACTTCACAGA CAAATAGAGA TTCTGTTGAA AAGACCTCGG ACAAGCTGCT TCAACCCTTA
  GAGCCTCACT TGCTCCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37518851	NES08877537	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss45335704	mCV25274147	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss148218698	ENSMUSSNP2690870	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27317417					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518851	NES08877537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163884401 () rs orientation: forward

Symbol	Name	Function Class
Pabpc1l	poly(A) binding protein, cytoplasmic 1-like	within coordinates
Rr569544	regulatory region 569544	1642 bp distal
Tssr21509	transcription start site region 21509	106 bp downstream