rs27317419 SNP Detail

Summary

• ID
  rs27317419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163883344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAGGCC TGCAATCCAG
  GGGTGTGGCA GTTTGAGAGT CACTGCTGGA GTGGTGCTTT AAAGGGCTCT TGCCTCTCAG
  GCCTGAAAAG GGTTAAGAAT GTCCTCTGCA TCTTGTCTGT GGAAAGATGA GACTGGTTAG
  TTCAGAAGCT CTGATCCCAG CAGCCATGAC AGGAACTAGC AGTTGCACAG TCGACAGACA
  R
  CCGTGAGGGA ACTCTGAGGG AACTCTGGGT CTGAGACATA CAACAATCTC TCTCTCTCTC
  TCTCTCCCTT TCTCTTTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTT TCTCTCTCTC TCTCTCTCTC CTAGATAGCA CAGGCTGGCT TTGACTCACT
  ATGTGGCACA GGCTGGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37518853	NES08877560	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27317419					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518853	NES08877560	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163883344 () rs orientation: forward

Symbol	Name	Function Class
Pabpc1l	poly(A) binding protein, cytoplasmic 1-like	within coordinates
Rr569544	regulatory region 569544	585 bp distal
Tssr21509	transcription start site region 21509	944 bp upstream