rs27320209 SNP Detail

Summary

• ID
  rs27320209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158565247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGCAG AGATGCCCCG
  GTTTCCCCTC TGCCCACCAG CTGCCCTGAT TTCTACTCCT GCATAGGCTG AGATGGCTGT
  CTTGCAGCCA CAGGAGGTTG TGGCAGGAGG GAAGATGTGT GCGTGGGCCA GGGACCTACA
  GAGCCGGCAG CAGATTCCAT TAGGAGGGCA ACTTCTTGGT TCTGATGTGA CAAGAAAGCC
  M
  GGTCTTTATC AGAAATGGCT TAACCTAACC CCAGCAAACA ATGCCCCCCC CCAACCCCCC
  AGCCAGCAAA CAGGAAGCAG AGGCTGGATA AAAATACTGT CCTCTGCAGC TGCGGCTGAG
  CCATCTAGCT TTCAGAAAAC CCTGCTCTTG ACAGGAAACA CAGCTGCTGC TGAGAGGAGA
  GAGAAGAGTC GGGTGAGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37541934	NES08902699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27320209					SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37541934	NES08902699	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158565247 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Intron
Rr367352	regulatory region 367352	37 bp downstream
Rr367353	regulatory region 367353	within coordinates
Rr568828	regulatory region 568828	1959 bp distal
Rr568829	regulatory region 568829	771 bp distal
Rr568830	regulatory region 568830	within coordinates
Tssr21375	transcription start site region 21375	112 bp upstream
Tssr21376	transcription start site region 21376	128 bp upstream