rs27320215 SNP Detail

Summary

• ID
  rs27320215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158564271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTCTTT TCCACCAGGT
  GGATTCCGGG AACCCAGAGT GTCAGGTTTG GCAGAAAGTA CCTTTACCCA CTGAGACATC
  TCACCGCCCC CCCCCCCCCC CACCACACTA TGAAAGGTTT TCAGACAGGA AAGAAATGTG
  CCAGGCTTGT GATTTCAGAA ATTCTGAGGA GCTGCTGACA GCTGCTTTCC TGCCAGGCCA
  R
  AGTGACCCTT AGCTCAGGAG GGCTCCATCT TCACATGGCC GGAAAGCCTG AGCTATCCTG
  CTGGAACCAG GAAGACACAG GTACAAAGTG ATATGTGTGG ACAGCTCAGC ATTGTGACCG
  GAAATAAACC CTGAATCAGC TGGAGGCTTC ACAGAAGAGT TTCCCCAGCT AAGGGAGATT
  GGGACAGCTG TGGGCAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37541940	NES08902710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27320215					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37541940	NES08902710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158564271 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Intron
Rr367352	regulatory region 367352	741 bp upstream
Rr367353	regulatory region 367353	904 bp upstream
Rr568828	regulatory region 568828	983 bp distal
Rr568829	regulatory region 568829	within coordinates
Rr568830	regulatory region 568830	451 bp proximal
Tssr21375	transcription start site region 21375	1088 bp upstream
Tssr21376	transcription start site region 21376	1104 bp upstream