rs27320220 SNP Detail

Summary

• ID
  rs27320220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158563011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGCTG ACCCAGCGCC
  TGGGTTACAT AAGGTGTCTT TGGAACTTGG CTCCTTTTGA GCTGATATGG GGAAAGGATG
  CCCAAACAGG CAAGCAGGTG GAACCGGAGA GGAGGGTGGT GCCTTCGGGT CACTTCCAGG
  TCAGCCTGCA TTCTGGGCGA TGGTTGATTC ATTCATCAAA CACTGCTGGC ATCTACTCTG
  Y
  GTCCAACCTG CTGCTGCGTT CATGAGGCCT CACCCTGGCT GCAGGGGTGC CCAAAGTCAC
  GTGGGGTGCC CAAAGTTACG TAGGGTGCCC AAAGTCACGT GACCATGTAG CTCCGCTCTT
  GCCATTAGAA AAGTAGCATC CTCTTATGGA GCTCTAAACC TCGCCTTAGC CGAGCTGTTG
  GGGGGGAGGG GAGAGGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37541945	NES08902769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27320220					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37541945	NES08902769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158563011 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Intron
Rr397449	regulatory region 397449	1901 bp downstream
Rr568827	regulatory region 568827	1062 bp distal
Rr568828	regulatory region 568828	within coordinates
Rr568829	regulatory region 568829	997 bp proximal
Rr568830	regulatory region 568830	1711 bp proximal