rs27322015 SNP Detail

Summary

• ID
  rs27322015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156264516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG CGGATTTAGT CACTGTCTGC
  Y
  GGGTTCAGAT ACTGGTACTG AAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37549944	NES08909213	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C		C	T	C		T
ss320579306	CHEV_2_156248332	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322015					SNP	T	C	C	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549944	NES08909213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156264516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	614 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	1845 bp downstream
Tssr21157	transcription start site region 21157	1734 bp downstream
Tssr21158	transcription start site region 21158	1553 bp downstream
Tssr21159	transcription start site region 21159	1531 bp downstream
Tssr21160	transcription start site region 21160	1520 bp downstream
Tssr21161	transcription start site region 21161	1482 bp downstream
Tssr21162	transcription start site region 21162	1473 bp downstream
Tssr21163	transcription start site region 21163	1453 bp downstream
Tssr21164	transcription start site region 21164	1422 bp downstream