rs27322017 SNP Detail

Summary

• ID
  rs27322017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156263243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTGGG CGGCCACTGG
  ACGAAGGGAC TCAGAGACAG ACAGACAGAC GGCTCCCGGA AGCCGCGCCG CCGCCGCCAG
  GTTAGCAGGG CGCGGAGACC GAGCAGGCTG TTGCTACGTC CCGAGCTCGC GTGCTGGAGG
  ACGTGCGTGG CCGAAGCTAC GATTCGTGTC TTTGCGGGTA CGTGTCGGGG TCCACATCTC
  Y
  GGGTGTGCGT TTAATGTGAA CGCGCGTGTG TCTGTGGGTC GGTGCAAGTG GTGTGTACGT
  GCGTGTGCAT CTGAGTAAGG GGCTGGGTGG TGTACTAATC TGGTAAGGGT CTGTGTGCCC
  TGGTTTGCTT ATCCGGAGAT GTGCCTAGAG AGGGTGTGTC CCAATGTGTA ACAGTGTGTA
  CATCTGGATG AGGCAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37549946	NES08909219	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322017					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549946	NES08909219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156263243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	572 bp downstream
Tssr21157	transcription start site region 21157	461 bp downstream
Tssr21158	transcription start site region 21158	280 bp downstream
Tssr21159	transcription start site region 21159	258 bp downstream
Tssr21160	transcription start site region 21160	247 bp downstream
Tssr21161	transcription start site region 21161	209 bp downstream
Tssr21162	transcription start site region 21162	200 bp downstream
Tssr21163	transcription start site region 21163	180 bp downstream
Tssr21164	transcription start site region 21164	149 bp downstream