rs27322020 SNP Detail

Summary

• ID
  rs27322020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAAGGA CTGCCACCTC
  AGACTGGTTG GAAAGAGCTG CGTGGTCCTC CACAGCTCCG CAGCTTAGGC CGCCCGAACA
  ATAGGAGGGA GGCTGAAGGG TAGTGGGCGT CGGCCAGGTC CCTGCTGGAG GGAGTGGAGG
  CCAGTGGTGC TGCTGGTCCC CCAGGTTAGC CCAGGCTACC GGCCTGAACG CCAAGCTCTC
  R
  GTCAAAGGCG AGGTGAAGCA GACTTGGTGC CGGTGGCGAC TCTCTAGGAG GTGGAGTAAG
  GCCGAGCCCA CGGGGCTGGG ACCTGGAGGG AGAGGAGGCT CCGTGGAGAG TCTCGTCTTC
  GTGGTCCCGC TGCTCGCCTC GGCCTCTGAG CTCTGCCTAG GCTCTGGTGG GCGTCTGTCC
  CACGTGGGGG AAGCCAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37549949	NES08909259	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	G
ss148072152	ENSMUSSNP3906962	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322020					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549949	NES08909259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	287 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1914 bp downstream
Tssr21156	transcription start site region 21156	98 bp upstream
Tssr21157	transcription start site region 21157	215 bp upstream
Tssr21158	transcription start site region 21158	416 bp upstream
Tssr21159	transcription start site region 21159	430 bp upstream
Tssr21160	transcription start site region 21160	453 bp upstream
Tssr21161	transcription start site region 21161	461 bp upstream
Tssr21162	transcription start site region 21162	494 bp upstream
Tssr21163	transcription start site region 21163	507 bp upstream
Tssr21164	transcription start site region 21164	540 bp upstream