rs27322022 SNP Detail

Summary

• ID
  rs27322022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTTCAAAGC AGTACCTTCC
  R
  GCAGGAGCCT GTAAGGTCCA GGGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37549951	NES08909257	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	A		G	G	A	G		G		A	A	G		G
ss45322266	mCV23687266	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss148072142	ENSMUSSNP2204464	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G					G
ss320579291	CHEV_2_156246031	CHEVERUD	SCREENING_POP	f	SNP													G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322022					SNP	A	A	G	G	A	G	A	G	G	G	A	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549951	NES08909257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	60 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	614 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1587 bp downstream
Tssr21156	transcription start site region 21156	425 bp upstream
Tssr21157	transcription start site region 21157	542 bp upstream
Tssr21158	transcription start site region 21158	743 bp upstream
Tssr21159	transcription start site region 21159	757 bp upstream
Tssr21160	transcription start site region 21160	780 bp upstream
Tssr21161	transcription start site region 21161	788 bp upstream
Tssr21162	transcription start site region 21162	821 bp upstream
Tssr21163	transcription start site region 21163	834 bp upstream
Tssr21164	transcription start site region 21164	867 bp upstream