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rs27322022 SNP Detail
Summary
  • ID
    rs27322022
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:156262215 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGTG TGTTCAAAGC AGTACCTTCC
    R
    GCAGGAGCCT GTAAGGTCCA GGGCG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37549951 NES08909257 PERLEGEN MM_PANEL2 f SNP A G G A G A G G A G G A A G G
ss45322266 mCV23687266 ABI CRAMUS_MOUSE f SNP A A G G G
ss148072142 ENSMUSSNP2204464 ENSEMBL ENSEMBL_Sanger f SNP A G G G
ss320579291 CHEV_2_156246031 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27322022 SNP A A G G A G A G G G A G G G G A A G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37549951 NES08909257 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:156262215 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12548 CpG island 12548 60 bp proximal
Epb41l1 erythrocyte membrane protein band 4.1 like 1 614 bp upstream
Rr55936 regulatory region 55936 within coordinates
Tssr21155 transcription start site region 21155 1587 bp downstream
Tssr21156 transcription start site region 21156 425 bp upstream
Tssr21157 transcription start site region 21157 542 bp upstream
Tssr21158 transcription start site region 21158 743 bp upstream
Tssr21159 transcription start site region 21159 757 bp upstream
Tssr21160 transcription start site region 21160 780 bp upstream
Tssr21161 transcription start site region 21161 788 bp upstream
Tssr21162 transcription start site region 21162 821 bp upstream
Tssr21163 transcription start site region 21163 834 bp upstream
Tssr21164 transcription start site region 21164 867 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory