rs27322024 SNP Detail

Summary

• ID
  rs27322024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAAGAT AAGGTAAGGT
  CACAAGAGGT GAAGGTGTTT ACATTTTGGA GTCATTTGCC TAGGTTGTTA CCCATGCAGA
  GGCCTCTAAT AAAACCCGGT AAGTTCTTAC ATTTACTTCT TCCTTTTCTT CCCTTCAAAG
  TCTAACAAAG GAGGCTTGGT ATTCCTGGCC TTCTGAGGTC TGGCCCTTGC TCTGGGAACC
  Y
  AAGCTCAGTT TCTTCAGCTA ACCCCATAGA CGCCCTACCT TCTATGGATA CTATTCTAGG
  TTCACTGTTT TCGTTACTTT GTCCTTTTCC TATGCTTAGC TTTACGTGTG TGTTCAAAGC
  AGTACCTTCC GGCAGGAGCC TGTAAGGTCC AGGGCGGATA TAATCATAAT TCAGAGAAAC
  GCTTGACTTT GGGCATGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37549953	NES08909255	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322024					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549953	NES08909255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	191 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	745 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1456 bp downstream
Tssr21156	transcription start site region 21156	556 bp upstream
Tssr21157	transcription start site region 21157	673 bp upstream
Tssr21158	transcription start site region 21158	874 bp upstream
Tssr21159	transcription start site region 21159	888 bp upstream
Tssr21160	transcription start site region 21160	911 bp upstream
Tssr21161	transcription start site region 21161	919 bp upstream
Tssr21162	transcription start site region 21162	952 bp upstream
Tssr21163	transcription start site region 21163	965 bp upstream
Tssr21164	transcription start site region 21164	998 bp upstream