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rs27322025 SNP Detail
Summary
  • ID
    rs27322025
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:156262065 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCAGGTGGAT CCCAGCTACC
    ACTTAAGATA AGGTAAGGTC ACAAGAGGTG AAGGTGTTTA CATTTTGGAG TCATTTGCCT
    AGGTTGTTAC CCATGCAGAG GCCTCTAATA AAACCCGGTA AGTTCTTACA TTTACTTCTT
    CCTTTTCTTC CCTTCAAAGT CTAACAAAGG AGGCTTGGTA TTCCTGGCCT TCTGAGGTCT
    R
    GCCCTTGCTC TGGGAACCCA AGCTCAGTTT CTTCAGCTAA CCCCATAGAC GCCCTACCTT
    CTATGGATAC TATTCTAGGT TCACTGTTTT CGTTACTTTG TCCTTTTCCT ATGCTTAGCT
    TTACGTGTGT GTTCAAAGCA GTACCTTCCG GCAGGAGCCT GTAAGGTCCA GGGCGGATAT
    AATCATAATT CAGAGAAACG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37549954 NES08909254 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27322025 SNP G G G G G G G G G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37549954 NES08909254 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:156262065 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12548 CpG island 12548 210 bp proximal
Epb41l1 erythrocyte membrane protein band 4.1 like 1 764 bp upstream
Rr55936 regulatory region 55936 within coordinates
Tssr21155 transcription start site region 21155 1437 bp downstream
Tssr21156 transcription start site region 21156 575 bp upstream
Tssr21157 transcription start site region 21157 692 bp upstream
Tssr21158 transcription start site region 21158 893 bp upstream
Tssr21159 transcription start site region 21159 907 bp upstream
Tssr21160 transcription start site region 21160 930 bp upstream
Tssr21161 transcription start site region 21161 938 bp upstream
Tssr21162 transcription start site region 21162 971 bp upstream
Tssr21163 transcription start site region 21163 984 bp upstream
Tssr21164 transcription start site region 21164 1017 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory