rs27322028 SNP Detail

Summary

• ID
  rs27322028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGC AGTGGAGCGG CTGAGTGAGC
  R
  CTGCTGAGTC CTGTCTTAGG TAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37549957	NES08909251	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G	A	A	G		G	G	G	A		G
ss45323999	mCV23687255	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss148072132	ENSMUSSNP1263398	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320579286	CHEV_2_156245440	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322028					SNP	G	G	A	A	G	A	G	A	A	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549957	NES08909251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	651 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1205 bp upstream
Rr55936	regulatory region 55936	176 bp proximal
Tssr21155	transcription start site region 21155	996 bp downstream
Tssr21156	transcription start site region 21156	1016 bp upstream
Tssr21157	transcription start site region 21157	1133 bp upstream
Tssr21158	transcription start site region 21158	1334 bp upstream
Tssr21159	transcription start site region 21159	1348 bp upstream
Tssr21160	transcription start site region 21160	1371 bp upstream
Tssr21161	transcription start site region 21161	1379 bp upstream
Tssr21162	transcription start site region 21162	1412 bp upstream
Tssr21163	transcription start site region 21163	1425 bp upstream
Tssr21164	transcription start site region 21164	1458 bp upstream