rs27322029 SNP Detail

Summary

• ID
  rs27322029
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC TACCGTCTGT TGCAACTGTA
  S
  AGATGAAATG AGACATGGAA GTATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37549958	NES08909250	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	C	G	C	C	G		C	G	G	C		C
ss45273365	mCV23687245	ABI	CRAMUS_MOUSE	f	SNP		G							C
ss148072127	ENSMUSSNP4584929	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss320579285	CHEV_2_156245384	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322029					SNP	G	G	C	C	G	C	G	C	C	G	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549958	NES08909250	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	707 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1261 bp upstream
Rr47255	regulatory region 47255	1968 bp distal
Rr55936	regulatory region 55936	232 bp proximal
Tssr21155	transcription start site region 21155	940 bp downstream
Tssr21156	transcription start site region 21156	1072 bp upstream
Tssr21157	transcription start site region 21157	1189 bp upstream
Tssr21158	transcription start site region 21158	1390 bp upstream
Tssr21159	transcription start site region 21159	1404 bp upstream
Tssr21160	transcription start site region 21160	1427 bp upstream
Tssr21161	transcription start site region 21161	1435 bp upstream
Tssr21162	transcription start site region 21162	1468 bp upstream
Tssr21163	transcription start site region 21163	1481 bp upstream
Tssr21164	transcription start site region 21164	1514 bp upstream