rs27322030 SNP Detail

Summary

• ID
  rs27322030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCTAAAT ATGGGAGTTC AAAATCAACG TCCAGGATCC
  TGCCTCTGCC CCTTTCCAAG CTCCTTAGTG ACTTTGTGCT CACGGCTACC GTCTGTTGCA
  R
  CTGTACAGAT GAAATGAGAC ATGGAAGTAT TTCTTCCATG CAGTGGAGCG GCTGAGTGAG
  CACTGCTGAG TCCTGTCTTA GGTAGGGCCT TGGTTTCCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37549959	NES08909249	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322030					SNP	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37549959	NES08909249	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	713 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1267 bp upstream
Rr47255	regulatory region 47255	1962 bp distal
Rr55936	regulatory region 55936	238 bp proximal
Tssr21155	transcription start site region 21155	934 bp downstream
Tssr21156	transcription start site region 21156	1078 bp upstream
Tssr21157	transcription start site region 21157	1195 bp upstream
Tssr21158	transcription start site region 21158	1396 bp upstream
Tssr21159	transcription start site region 21159	1410 bp upstream
Tssr21160	transcription start site region 21160	1433 bp upstream
Tssr21161	transcription start site region 21161	1441 bp upstream
Tssr21162	transcription start site region 21162	1474 bp upstream
Tssr21163	transcription start site region 21163	1487 bp upstream
Tssr21164	transcription start site region 21164	1520 bp upstream