rs27322691 SNP Detail

Summary

• ID
  rs27322691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156883420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTCGGGA AAAAAACAAA CAAACAAACA AAAAAAAAAG
  TGGGGAGAAA CATTGTTGTC ATATGATGAC TGCTAAATGG GAAACCGTTC AAAAGGTGCC
  Y
  TGGCTGCTAA CAGGATTCTG GCCTGTGCAC GACATGACAT TTTTATCCAG TTCTTCCAAC
  AAACCCACAG AACAGGAAGG CATGAGGAAA CAGACTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547712	NES08896207	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	T	C		C	T	T	C		T
ss320583706	CHEV_2_156867236	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322691					SNP	T	T	C	T	C	T	T	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547712	NES08896207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156883420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12565	CpG island 12565	596 bp distal
Mtcl2	microtubule crosslinking factor 2	Intron
Rr568412	regulatory region 568412	892 bp distal