rs27322693 SNP Detail

Summary

• ID
  rs27322693
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156883364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGCTTGG TCTACAAAGT GAGCTCTAGG ACAGCCGGAG
  CTATACAGAG AAACACTGTC TCGGGAAAAA AACAAACAAA CAAACAAAAA AAAAAGTGGG
  S
  AGAAACATTG TTGTCATATG ATGACTGCTA AATGGGAAAC CGTTCAAAAG GTGCCTTGGC
  TGCTAACAGG ATTCTGGCCT GTGCACGACA TGACATTTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547714	NES08896205	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G		G	G	C		G
ss320583704	CHEV_2_156867180	CHEVERUD	SCREENING_POP	f	SNP						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322693					SNP	G	G	C	C	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547714	NES08896205	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156883364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12565	CpG island 12565	540 bp distal
Mtcl2	microtubule crosslinking factor 2	Intron
Rr568412	regulatory region 568412	836 bp distal