rs27322702 SNP Detail

Summary

• ID
  rs27322702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156881894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCCTGGGA GCCCAAGGCA GGCAGAGCAG GGAAGGGCTC
  AGGCTGCTCC TTGCCAGAGC TCCCCAAGGC CACATCTGCC TTGCGGGTGA AGGCGTTCAG
  Y
  TCCTGTTGCA ACACACTCAG CCGCACCAGG ATGGCGTGGA TGAGCTTGGC ATCCCTGGGG
  CCCTCGCTGT TGTCAGGCGC CTCGTGCAGT CGCAAGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547723	NES08896243	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C		T		C	T		T	C	C	T		C
ss45290384	mCV23691431	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss148090124	ENSMUSSNP1283408	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320583697	CHEV_2_156865710	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27322702					SNP	C	C	T	C	T	C	C	T	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547723	NES08896243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156881894 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12565	CpG island 12565			within coordinates
Mtcl2	microtubule crosslinking factor 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr568412	regulatory region 568412			613 bp proximal