rs27322704 SNP Detail

Summary

• ID
  rs27322704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156881430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTGTGCC ACCACGCCTG
  GCTCAAAAAT GTTTTTAAAA AGAAGGGGCC AGGGATGTGG CTCAATGGTA GGGTTCTTGC
  CTTACATGTA TGAGGTCCTG CGTTGTGTCC CCAGCACTGG AAGAGGAGAG GGAAAGGGAG
  AAAAACGGGA AGTCTAGCAA AAAGATGGGA CCTCAGAATT AATCCCTATC CATAGTAAAC
  R
  CATACCAGGC AGTTTGCTGA GTCGGCAGGC TTATTCCTAG TTAGGTGAGA ATAAATAATT
  GTTTTTCCTA CCTGTAACAG CAAATAGTTG GCTGAGAGAA CACAGCCAGG CACTGCTGTG
  TTTAGTCTAT AGAATTTATA TAAAGCTCAA AGACGAATAA AACCAGAGAA CAGGGAGATG
  AACCATGGCT GCCTTAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547725	NES08896241	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27322704					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547725	NES08896241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156881430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12565	CpG island 12565			406 bp proximal
Mtcl2	microtubule crosslinking factor 2			Intron
				Noncoding-Transcript-Variant
Rr568412	regulatory region 568412			1077 bp proximal