rs27323874 SNP Detail

Summary

• ID
  rs27323874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155429584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGACCTCA GCAACACGCC
  CTCGGCCAGG GCCCTGTCTA TGGCCTGCTT TGCCAGTTCT TCGAGCTGCT TCTCATCCTG
  CAAGATGCTG CCCCAGCTGG TAGCCATCCC AACCTGTGAC AGACAAGAGG ACTTGGTGAC
  AGAAGGCCTG GGACGCAGCA GCCACCCAAA TGTGGCTACT TCCAACATTG TGAGACCTGC
  Y
  CAGTTAGTTA CCACGGAGGG GCAACTGTGG GAGGAGGCAA ACTGCTTCCA CTCCCTCCGT
  GGGCATAAAT CAAGTGACAA AATGCTTCCA TGGCTACTCA TTCTCTTTGG ATGCTCAAAA
  CAGCAATGGC ATTACTCTCA CAGCGAGGAG ACAAAGGTTC AGAGAAGTGA AATGACTTGT
  CTAGACAATG GTGTTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552697	NES08899685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323874					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552697	NES08899685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155429584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr374116	regulatory region 374116			1872 bp upstream
Rr568069	regulatory region 568069			1740 bp distal
Rr568070	regulatory region 568070			1174 bp distal
Rr568071	regulatory region 568071			1890 bp proximal