rs27323875 SNP Detail

Summary

• ID
  rs27323875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155429521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTGGAG GGTGGGCTCA
  GAGGACCATG ATGAAGCTTA CGTCGGAGGA GCTGGGATGC TGTGCGGACC TCAGCAACAC
  GCCCTCGGCC AGGGCCCTGT CTATGGCCTG CTTTGCCAGT TCTTCGAGCT GCTTCTCATC
  CTGCAAGATG CTGCCCCAGC TGGTAGCCAT CCCAACCTGT GACAGACAAG AGGACTTGGT
  R
  ACAGAAGGCC TGGGACGCAG CAGCCACCCA AATGTGGCTA CTTCCAACAT TGTGAGACCT
  GCCCAGTTAG TTACCACGGA GGGGCAACTG TGGGAGGAGG CAAACTGCTT CCACTCCCTC
  CGTGGGCATA AATCAAGTGA CAAAATGCTT CCATGGCTAC TCATTCTCTT TGGATGCTCA
  AAACAGCAAT GGCATTACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37552698	NES08899684	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27323875					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552698	NES08899684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155429521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr374116	regulatory region 374116			1935 bp upstream
Rr568069	regulatory region 568069			1677 bp distal
Rr568070	regulatory region 568070			1111 bp distal
Rr568071	regulatory region 568071			1953 bp proximal