rs27323878 SNP Detail

Summary

• ID
  rs27323878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155429102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGTAG GAAAAAACAG
  AAGGAGCGCC CTGAGTTCAA GGCCCCTTTC ATGTACACAG TGAGGGTTAG ACTAACTAGG
  GCTCCATGCT AAGACTCTAT TTCCAAAACA AACAGAAAAG CAACTACAGA GAAGACAGCA
  TGATTCACAA TTCAGGGTGC TTAGTGTATG TGGGTTCCCT GGTCAAAGCA CTTCTTGGGA
  R
  TTATCTCCTA ATTATCCTAC TGAGTCAACT ATATAGTCTT ACTGTGTCTA CATACTGGAA
  GAAAGTACAC CTTACGGAAA TTAAGTAGCT GCCTAAATTA CACTTCAAAC CACAGATTTT
  AGTGTGATTA CTCCAGCATG CTGCTTTTTA CTTTTAGAAA TCAATTTTAG TTATTGAATA
  AAATAAAGAG ACAGTCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552701	NES08899681	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323878					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552701	NES08899681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155429102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568069	regulatory region 568069			1258 bp distal
Rr568070	regulatory region 568070			692 bp distal