rs27323881 SNP Detail

Summary

• ID
  rs27323881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155429040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATAGA TGTGTGTGAG
  AGAGTATGTG TTATCCCAAG CCAAGACAGA CCTGCTGATG AACACTTAGT AGGAAAAAAC
  AGAAGGAGCG CCCTGAGTTC AAGGCCCCTT TCATGTACAC AGTGAGGGTT AGACTAACTA
  GGGCTCCATG CTAAGACTCT ATTTCCAAAA CAAACAGAAA AGCAACTACA GAGAAGACAG
  Y
  ATGATTCACA ATTCAGGGTG CTTAGTGTAT GTGGGTTCCC TGGTCAAAGC ACTTCTTGGG
  AGTTATCTCC TAATTATCCT ACTGAGTCAA CTATATAGTC TTACTGTGTC TACATACTGG
  AAGAAAGTAC ACCTTACGGA AATTAAGTAG CTGCCTAAAT TACACTTCAA ACCACAGATT
  TTAGTGTGAT TACTCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552704	NES08899678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323881					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552704	NES08899678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155429040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568069	regulatory region 568069			1196 bp distal
Rr568070	regulatory region 568070			630 bp distal