rs27323884 SNP Detail

Summary

• ID
  rs27323884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155428261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGCAAT CCTCCTGCCT
  CATAAGTGCG ACTGAGCCCA GGAGAAGGAG TATGATACAG AGAAACCCTG TCTCAAAATG
  CCAAAGTGTG TGTGTGTACG CACTCGCACA CACACCTTTG ATGTACCAAT GAGTGTTTAA
  TCTTTGTATC ATAAAACAAT ACTATTGAGT GTTACCATTA GGGGAAAGTA TGCCTAAGAG
  Y
  AAGTAGAATA AGCAACTAAA TGAGAACTGA AATTTGGCCT TTATTTTTTT CCTCCTCCTC
  CTCCTTCTCC TTCAGATTTA TTGACTTTAT AACTTTATAT ATGCGAGTAC ACTATTGTTC
  TCTTAGACAC ACCAGAAGGG GGCATCAGAT CCCATTACAG ATGGATGTGA GCCACCATGT
  GGTTGCTGGG AATTGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552707	NES08899810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323884					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552707	NES08899810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155428261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568067	regulatory region 568067			1848 bp distal
Rr568068	regulatory region 568068			1993 bp distal
Rr568069	regulatory region 568069			417 bp distal
Rr568070	regulatory region 568070			128 bp proximal