rs27323894 SNP Detail

Summary

• ID
  rs27323894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155427395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCCCA GAATCAAAAG
  GTCAGATGGG CTGTCTGACT TCACCTGAGT CCACCCATTG ACCAGCCCTG CCTTTCAGCT
  GCATTCTTTG AACATTTTTG CCCTCTCCGT ACTTTGGGGG TGTCCCCCAT TTGTCTTTTT
  AGCTCAGTCT GTCTATCATT CACCATTTTA CCTCTGATCA AAATGAATCG CTACTTCTAT
  Y
  GGGTGTCCCA AGAAAGACCG GCAGGGTGGG AATGTGCAGA GCCTGCCTTG AGAGCCTAAC
  TCCGTGGGAT TAGAGTCCGG CTCTGCCAAT CTTCCCACGA CCTCAGTGAC CTCAGTCGGG
  TTACTTAACT TCTCCGAGCT GAGATTTCCT CATCTCTGTG GCTGTGAAGG TTAAATGAGT
  CAGCAGTTCC AAAGTAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552718	NES08899883	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323894					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552718	NES08899883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155427395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568067	regulatory region 568067			982 bp distal
Rr568068	regulatory region 568068			1127 bp distal
Rr568069	regulatory region 568069			within coordinates
Rr568070	regulatory region 568070			994 bp proximal