rs27323898 SNP Detail

Summary

• ID
  rs27323898
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155427013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACCGCC TGTAAGTAGA
  GTTCCAGAGG ACCTGAAGTT TCTTCTGGCA TCTGTAGGTA GTGCACATAC ATACACTTGG
  GCACACACAT AAACACATAA AATAAGAATA AATATTTAAA AATAGAAATG CTGCTAACTT
  TTTTTTTCTT GAAAAAGGGA AGAAGACAAC ACTAACAAAA ATGTAAAGAT GGCTTGCCTC
  M
  GAGGGAAACG GCGGCTGGGG GAAGGAGTCT TACTCTACAC TGGATATGCT TTTGGACAGT
  TCACCTAGCT CATGTGTTAG CAGTTCAAAA TGAAGTCCCT GTCTAACGCT GCAGGTGTCA
  AATCTTAAAC CCTCACGGGG CTGATCTGCT GCATCGATCT ACAGGGTGAA GGTCACAGTC
  CCCTCTGCCC AGAATCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37552722	NES08899879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27323898					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37552722	NES08899879	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155427013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568067	regulatory region 568067			600 bp distal
Rr568068	regulatory region 568068			745 bp distal
Rr568069	regulatory region 568069			77 bp proximal
Rr568070	regulatory region 568070			1376 bp proximal