rs27324341 SNP Detail

Summary

• ID
  rs27324341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156556500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCCTTAA ACTCACAGAG
  ATAAGCCTGC TTCTGCCTCC CAAGTGCTGA GATTAAAGGC CTAAGCCCCA GTCTGTGTGG
  TATTTAACAG GCAACGACTT TGTTTTGATC TTTATCTTAG ACTATATCTT CATTTGAAAA
  TGATCTACTG GCTCGAGACT AAAACTGACA GATTTATTTT CCAACTCAGC CATTTCTGGG
  Y
  CCTTCCTATT TCCCCTGAGT GTCCCTGACA GGTTGGCTGT TTCTTTTGCA TTTTCTCTTT
  AAGCTCTTAT CCAAAGGAGG CAGGCCTTGC CCAAGTCTAT CTGCACACGG GAAGTCACTC
  TAGGTGGATT TCCTTGGGAG TCCTGACCCA CGCAGAATCC AGGCTCCTTT TCCAATCCTC
  CTCTAAGAGT TTGCTCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37548862	NES08905331	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27324341					SNP	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548862	NES08905331	PERLEGEN	MM_PANEL	f	SNP	C/T
ss148080996	ENSMUSSNP3224205	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156556500 () rs orientation: forward

Symbol	Name	Function Class
4930405A21Rik	RIKEN cDNA 4930405A21 gene	within coordinates
Dlgap4	DLG associated protein 4	within coordinates