rs27324345 SNP Detail

Summary

• ID
  rs27324345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156555340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAATGT CCCACTGGGG AAGGCAAGTC GGATGACTGA
  GCTCGCAGTC AAGGACGAGG GCTCTCCCAC TCTTGCAGGG GAGACTGTAT CCCTGTGGCA
  Y
  AAGGCGTGTA CACAAGACGG CTGGAGATCG GTGGTAATCA TTCAACCTGC TGCATCCCAC
  ACATGTATTC ATGCCTCGCT CACAGGGAAT GCTAAGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37548866	NES08905342	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C	T		T	C	C	C
ss148080921	ENSMUSSNP2928663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss320581482	CHEV_2_156539156	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27324345					SNP	C	C	C	T	C	T	C	T	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37548866	NES08905342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156555340 () rs orientation: forward

Symbol	Name	Function Class
4930405A21Rik	RIKEN cDNA 4930405A21 gene	1119 bp downstream
Dlgap4	DLG associated protein 4	within coordinates