rs27327820 SNP Detail

Summary

• ID
  rs27327820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166492703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCACCCA CAGAGGACAT GCACACAAGC CAACATGACG
  AGCCATGGGC ACCAAGAACA GCTCGTGACC CGGAAAGAAT GTGCCAGGAG GGGTTCTGGG
  Y
  GCAGACACAG CAGCCCCACA GTGGCCTCCA CCCTGCAGGT GCCAGTATCA TCTGTACTGT
  GGGGCTGCTG AGGGACCCTC TAAGTGACTC TGTCCAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37510045	NES08856641	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	C	T	T	T	T	C	C
ss148257468	ENSMUSSNP7116712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27327820					SNP	C	T	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37510045	NES08856641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166492703 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			within coordinates
Rr570328	regulatory region 570328			568 bp proximal
Rr570329	regulatory region 570329			730 bp proximal
Rr570330	regulatory region 570330			2000 bp proximal