rs27327822 SNP Detail

Summary

• ID
  rs27327822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166492298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTCAGTAA GGAGGGATGT CACATCTCTT CTTACAATTG
  AACCCTCACG GCCGAGAGCA GAATGTGGTC CACCACAGAC ACTGGGAAGT CAAACATAGC
  Y
  GAGAGGGCCC TGACACAGGG AAGGAGCCTC AACTCAAGCC CCTGAGACAG TTGAACTTGC
  TTTTTAAAAG GACACAGTAG GAATGGCTGG GAGCAAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37510047	NES08856637	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	C	C	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27327822					SNP	C	T	C	T	T	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37510047	NES08856637	PERLEGEN	MM_PANEL	f	SNP	C/T
ss148257456	ENSMUSSNP4017147	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166492298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			68 bp proximal
Rr570328	regulatory region 570328			973 bp proximal
Rr570329	regulatory region 570329			1135 bp proximal