rs27328574 SNP Detail

Summary

• ID
  rs27328574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146699290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TGTGCTTAGT GAGATCTCAG
  R
  GAGAATACAA TAGAGAGAGA GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498202	NES08945703	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G			A	A		G
ss147874151	ENSMUSSNP6281428	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
ss320546301	CHEV_2_146683106	CHEVERUD	SCREENING_POP	f	SNP							G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328574					SNP	A	A	G	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498202	NES08945703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146699290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12373	CpG island 12373	1096 bp distal
D2Dcr102	DNA Segment, Chr 2, Derry C. Roopenian 102	59 bp distal
Kiz	kizuna centrosomal protein	within coordinates
Rr397370	regulatory region 397370	688 bp downstream
Rr566738	regulatory region 566738	1496 bp distal
Rr566739	regulatory region 566739	1525 bp distal
Tssr20613	transcription start site region 20613	1545 bp downstream
Tssr20614	transcription start site region 20614	1444 bp downstream