rs27328578 SNP Detail

Summary

• ID
  rs27328578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146697169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA GTAAACGGTT TGATTCACAA
  R
  GACCTAGTTA GAAACCAAAT CTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498206	NES08927739	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G		G	A	G		A
ss320546291	CHEV_2_146680985	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328578					SNP	G	A	G	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498206	NES08927739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146697169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12373	CpG island 12373	394 bp proximal
D2Dcr102	DNA Segment, Chr 2, Derry C. Roopenian 102	1967 bp proximal
Kiz	kizuna centrosomal protein	615 bp upstream
Rr397370	regulatory region 397370	1133 bp upstream
Rr566738	regulatory region 566738	125 bp proximal
Rr566739	regulatory region 566739	575 bp proximal
Tssr20613	transcription start site region 20613	566 bp upstream
Tssr20614	transcription start site region 20614	612 bp upstream