rs27328949 SNP Detail

Summary

• ID
  rs27328949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167620170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAATGACT CCAGAGCCCT
  GGAGAGGCCG TCCCACCTGG GGTACCATCT TCCAGGACAA CAGGCCTCAG GAAGTGAGCC
  ACTTTAACTT AGTTCGCCCT GTCTCCATTT AATCCGTGCG CACTAATTGA ACATCACGGT
  GTTCCACAAG CACACGACTG GGTTCCAGAG ACAGCAGTGC GTGAAGAAGG AAGCGTTACA
  R
  TTGATTATGG AGAAAGTGTG GGGGGGGCAG GCTCACTCCG TAGCCTAGGT TTGCCTCCCA
  CTCAGGACCC TTAGCCTCCG TCTCTCCAGG GCAGGGACTC CAGGTGTGCA CCCCCATACC
  TGGGCAGCAG AAGCAGGAAG CTTGAGAGCA TATTTGTGAT TGGCTGGCTC TGTTTGGCTG
  GCAGACAACA CAGGTGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507282	NES08842037	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328949					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507282	NES08842037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167620170 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	within coordinates
Cpgi12755	CpG island 12755	248 bp distal
Gm14321	predicted gene 14321	within coordinates
Gm32287	predicted gene, 32287	within coordinates
Rr56125	regulatory region 56125	within coordinates
Tssr773	transcription start site region 773	1485 bp downstream
Tssr774	transcription start site region 774	243 bp upstream
Tssr21850	transcription start site region 21850	737 bp downstream
Tssr21851	transcription start site region 21851	144 bp downstream
Tssr21852	transcription start site region 21852	81 bp downstream
Tssr27806	transcription start site region 27806	968 bp upstream
Tssr27807	transcription start site region 27807	340 bp upstream
Tssr27808	transcription start site region 27808	316 bp upstream