rs27328952 SNP Detail

Summary

• ID
  rs27328952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167619172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACATCCT AATCAGATGC TATGGAAGAT AGGGATTGTA
  GGCAAGCCTT GCTCCAGGAC CCTCAGCCTC TTCTAAAGTG AATGGGCTAG CTCTTATCTG
  Y
  CTGTGCAACT CTAGTGTTAA CTTTGGATAG AACCCATCCC TGCTGTTATT TATTAAGTGC
  CTCCTGTATG CAAACTCATG CTCATCTGCC CCCACCCCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507285	NES08842032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328952					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507285	NES08842032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167619172 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	212 bp upstream
Cpgi12755	CpG island 12755	181 bp proximal
Gm14321	predicted gene 14321	239 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Rr56124	regulatory region 56124	1571 bp distal
Rr56125	regulatory region 56125	within coordinates
Tssr772	transcription start site region 772	1557 bp downstream
Tssr773	transcription start site region 773	487 bp downstream
Tssr774	transcription start site region 774	744 bp downstream
Tssr21849	transcription start site region 21849	1699 bp downstream
Tssr21850	transcription start site region 21850	223 bp upstream
Tssr21851	transcription start site region 21851	840 bp upstream
Tssr21852	transcription start site region 21852	905 bp upstream
Tssr27804	transcription start site region 27804	1851 bp upstream
Tssr27805	transcription start site region 27805	1773 bp upstream
Tssr27806	transcription start site region 27806	17 bp downstream
Tssr27807	transcription start site region 27807	646 bp downstream
Tssr27808	transcription start site region 27808	668 bp downstream