rs27328953 SNP Detail

Summary

• ID
  rs27328953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167619162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCGCA GACAAATACC
  ACTGGTTTTA ATCCTATTTA ACAAACTAAT GAGATGTGAA AGAAAGTTGT GGGCTTGGGG
  ACATGGACAT CAACCCAAGG GCAGTGGAGA CTTACATCCT AATCAGATGC TATGGAAGAT
  AGGGATTGTA GGCAAGCCTT GCTCCAGGAC CCTCAGCCTC TTCTAAAGTG AATGGGCTAG
  Y
  TCTTATCTGT CTGTGCAACT CTAGTGTTAA CTTTGGATAG AACCCATCCC TGCTGTTATT
  TATTAAGTGC CTCCTGTATG CAAACTCATG CTCATCTGCC CCCACCCCCT TCCTCCATCC
  TCTCCTCCCT CCATCCCAGC AGGGACTCAC CACACTTCCC AAGGGAGGAC AGTACTGGGG
  CTTTGCCCAC AGAGGAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507286	NES08842030	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328953					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507286	NES08842030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167619162 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	222 bp upstream
Cpgi12755	CpG island 12755	191 bp proximal
Gm14321	predicted gene 14321	249 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Rr56124	regulatory region 56124	1561 bp distal
Rr56125	regulatory region 56125	within coordinates
Tssr772	transcription start site region 772	1547 bp downstream
Tssr773	transcription start site region 773	477 bp downstream
Tssr774	transcription start site region 774	754 bp downstream
Tssr21849	transcription start site region 21849	1689 bp downstream
Tssr21850	transcription start site region 21850	233 bp upstream
Tssr21851	transcription start site region 21851	850 bp upstream
Tssr21852	transcription start site region 21852	915 bp upstream
Tssr27804	transcription start site region 27804	1841 bp upstream
Tssr27805	transcription start site region 27805	1763 bp upstream
Tssr27806	transcription start site region 27806	27 bp downstream
Tssr27807	transcription start site region 27807	656 bp downstream
Tssr27808	transcription start site region 27808	678 bp downstream