rs27328954 SNP Detail

Summary

• ID
  rs27328954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167619127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATCCACC CGCAGCGACG
  GGGATCCTGC CCCATCCTCT CCGCAGACAA ATACCACTGG TTTTAATCCT ATTTAACAAA
  CTAATGAGAT GTGAAAGAAA GTTGTGGGCT TGGGGACATG GACATCAACC CAAGGGCAGT
  GGAGACTTAC ATCCTAATCA GATGCTATGG AAGATAGGGA TTGTAGGCAA GCCTTGCTCC
  R
  GGACCCTCAG CCTCTTCTAA AGTGAATGGG CTAGCTCTTA TCTGTCTGTG CAACTCTAGT
  GTTAACTTTG GATAGAACCC ATCCCTGCTG TTATTTATTA AGTGCCTCCT GTATGCAAAC
  TCATGCTCAT CTGCCCCCAC CCCCTTCCTC CATCCTCTCC TCCCTCCATC CCAGCAGGGA
  CTCACCACAC TTCCCAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507287	NES08842028	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328954					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507287	NES08842028	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167619127 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	257 bp upstream
Cpgi12755	CpG island 12755	226 bp proximal
Gm14321	predicted gene 14321	284 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Rr56124	regulatory region 56124	1526 bp distal
Rr56125	regulatory region 56125	within coordinates
Tssr772	transcription start site region 772	1512 bp downstream
Tssr773	transcription start site region 773	442 bp downstream
Tssr774	transcription start site region 774	789 bp downstream
Tssr21849	transcription start site region 21849	1654 bp downstream
Tssr21850	transcription start site region 21850	268 bp upstream
Tssr21851	transcription start site region 21851	885 bp upstream
Tssr21852	transcription start site region 21852	950 bp upstream
Tssr27803	transcription start site region 27803	1991 bp upstream
Tssr27804	transcription start site region 27804	1806 bp upstream
Tssr27805	transcription start site region 27805	1728 bp upstream
Tssr27806	transcription start site region 27806	62 bp downstream
Tssr27807	transcription start site region 27807	691 bp downstream
Tssr27808	transcription start site region 27808	713 bp downstream